Detailed information of SNP:
|
SNP ID:
sf0411701152(Gbrowse)
Chromosome: chr04 Position: 11701152 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 66.74% | 33.26% |
| All Indica | 797 | 97.49% | 2.51% |
| All Japonica | 495 | 13.13% | 86.87% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 373 | 98.12% | 1.88% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 333 | 13.21% | 86.79% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0411701152 | C->T | LOC_Os04g20860(LOC_Os04g20860.1) | Synonymous |