Detailed information of SNP:
|
SNP ID:
sf0411797476(Gbrowse)
Chromosome: chr04 Position: 11797476 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1393 | 94.47% | 5.53% |
| All Indica | 797 | 96.74% | 3.26% |
| All Japonica | 474 | 91.35% | 8.65% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 95.72% | 4.28% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 318 | 91.82% | 8.18% |
| Tropical Japonica | 93 | 90.32% | 9.68% |
| Japonica Intermediate | 63 | 90.48% | 9.52% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0411797476 | T->A | LOC_Os04g20990(LOC_Os04g20990.1) | INTRON |