Detailed information of SNP:



SNP ID: sf0411797799(Gbrowse)

Chromosome: chr04

Position: 11797799
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1305 89.73% 10.27%
All Indica706 87.54% 12.46%
All Japonica495 100.00% 0.00%
Aus57 38.60% 61.40%
Indica I355 94.37% 5.63%
Indica II178 85.39% 14.61%
Indica Intermediate173 75.72% 24.28%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica93 100.00% 0.00%
Japonica Intermediate67 100.00% 0.00%
Group VI/Aromatic13 76.92% 23.08%
Intermediate34 76.47% 23.53%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0411797799 G->A LOC_Os04g20990(LOC_Os04g20990.1) INTRON