Detailed information of SNP:
|
SNP ID:
sf0411797799(Gbrowse)
Chromosome: chr04 Position: 11797799 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1305 | 89.73% | 10.27% |
| All Indica | 706 | 87.54% | 12.46% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 57 | 38.60% | 61.40% |
| Indica I | 355 | 94.37% | 5.63% |
| Indica II | 178 | 85.39% | 14.61% |
| Indica Intermediate | 173 | 75.72% | 24.28% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 34 | 76.47% | 23.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0411797799 | G->A | LOC_Os04g20990(LOC_Os04g20990.1) | INTRON |