Detailed information of SNP:
|
SNP ID:
sf0411798635(Gbrowse)
Chromosome: chr04 Position: 11798635 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1291 | 58.79% | 41.21% |
| All Indica | 694 | 48.70% | 51.30% |
| All Japonica | 485 | 69.28% | 30.72% |
| Aus | 61 | 91.80% | 8.20% |
| Indica I | 328 | 39.63% | 60.37% |
| Indica II | 190 | 53.68% | 46.32% |
| Indica Intermediate | 176 | 60.23% | 39.77% |
| Temperate Japonica | 332 | 83.13% | 16.87% |
| Tropical Japonica | 87 | 16.09% | 83.91% |
| Japonica Intermediate | 66 | 69.70% | 30.30% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 38 | 63.16% | 36.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0411798635 | C->T | LOC_Os04g20990(LOC_Os04g20990.1) | INTRON |