Detailed information of SNP:
|
SNP ID:
sf0411842511(Gbrowse)
Chromosome: chr04 Position: 11842511 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1359 | 86.68% | 13.32% |
| All Indica | 765 | 81.57% | 18.43% |
| All Japonica | 491 | 97.56% | 2.44% |
| Aus | 51 | 56.86% | 43.14% |
| Indica I | 367 | 92.92% | 7.08% |
| Indica II | 195 | 67.69% | 32.31% |
| Indica Intermediate | 203 | 74.38% | 25.62% |
| Temperate Japonica | 331 | 97.89% | 2.11% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0411842511 | A->G | INTERGENIC | None |