Detailed information of SNP:
|
SNP ID:
sf0411843020(Gbrowse)
Chromosome: chr04 Position: 11843020 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1263 | 58.75% | 41.25% |
| All Indica | 723 | 84.79% | 15.21% |
| All Japonica | 434 | 12.67% | 87.33% |
| Aus | 53 | 84.91% | 15.09% |
| Indica I | 355 | 95.21% | 4.79% |
| Indica II | 180 | 69.44% | 30.56% |
| Indica Intermediate | 188 | 79.79% | 20.21% |
| Temperate Japonica | 317 | 11.67% | 88.33% |
| Tropical Japonica | 53 | 13.21% | 86.79% |
| Japonica Intermediate | 64 | 17.19% | 82.81% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 39 | 64.10% | 35.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0411843020 | C->G | INTERGENIC | None |