Detailed information of SNP:
|
SNP ID:
sf0411854765(Gbrowse)
Chromosome: chr04 Position: 11854765 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1393 | 75.45% | 24.55% |
| All Indica | 792 | 65.28% | 34.72% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 52 | 7.69% | 92.31% |
| Indica I | 374 | 82.35% | 17.65% |
| Indica II | 213 | 61.50% | 38.50% |
| Indica Intermediate | 205 | 38.05% | 61.95% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 11 | 72.73% | 27.27% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0411854765 | C->T | INTERGENIC | None |