Detailed information of SNP:
|
SNP ID:
sf0411889775(Gbrowse)
Chromosome: chr04 Position: 11889775 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 94.03% | 5.97% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 486 | 85.80% | 14.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 85.89% | 14.11% |
| Tropical Japonica | 85 | 90.59% | 9.41% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0411889775 | C->T | INTERGENIC | None |