Detailed information of SNP:
|
SNP ID:
sf0411929406(Gbrowse)
Chromosome: chr04 Position: 11929406 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1302 | 94.55% | 5.45% |
| All Indica | 684 | 89.77% | 10.23% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 293 | 78.16% | 21.84% |
| Indica II | 195 | 99.49% | 0.51% |
| Indica Intermediate | 196 | 97.45% | 2.55% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0411929406 | C->T | INTERGENIC | None |