Detailed information of SNP:
|
SNP ID:
sf0412002058(Gbrowse)
Chromosome: chr04 Position: 12002058 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 95.32% | 4.68% |
| All Indica | 792 | 92.05% | 7.95% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 97.04% | 2.96% |
| Indica II | 211 | 95.73% | 4.27% |
| Indica Intermediate | 209 | 79.43% | 20.57% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412002058 | C->T | LOC_Os04g21290(LOC_Os04g21290.1) | INTRON |