Detailed information of SNP:
|
SNP ID:
sf0412031353(Gbrowse)
Chromosome: chr04 Position: 12031353 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1258 | 93.80% | 6.20% |
| All Indica | 658 | 90.27% | 9.73% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 56 | 82.14% | 17.86% |
| Indica I | 342 | 95.61% | 4.39% |
| Indica II | 178 | 88.20% | 11.80% |
| Indica Intermediate | 138 | 79.71% | 20.29% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 34 | 94.12% | 5.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412031353 | C->T | LOC_Os04g21330(LOC_Os04g21330.1) | INTRON |