Detailed information of SNP:
|
SNP ID:
sf0412033281(Gbrowse)
Chromosome: chr04 Position: 12033281 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 90.41% | 9.59% |
| All Indica | 789 | 84.92% | 15.08% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 373 | 91.15% | 8.85% |
| Indica II | 209 | 83.25% | 16.75% |
| Indica Intermediate | 207 | 75.36% | 24.64% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412033281 | C->T | LOC_Os04g21330(LOC_Os04g21330.1) | INTRON |