Detailed information of SNP:
|
SNP ID:
sf0412071065(Gbrowse)
Chromosome: chr04 Position: 12071065 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1388 | 90.92% | 9.08% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 468 | 75.64% | 24.36% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 318 | 93.71% | 6.29% |
| Tropical Japonica | 86 | 10.47% | 89.53% |
| Japonica Intermediate | 64 | 73.44% | 26.56% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412071065 | G->A | INTERGENIC | None |