Detailed information of SNP:
|
SNP ID:
sf0412079091(Gbrowse)
Chromosome: chr04 Position: 12079091 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1395 | 90.04% | 9.96% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 474 | 73.00% | 27.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 318 | 91.82% | 8.18% |
| Tropical Japonica | 90 | 8.89% | 91.11% |
| Japonica Intermediate | 66 | 69.70% | 30.30% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412079091 | A->G | LOC_Os04g21390(LOC_Os04g21390.1) | Non-Synonymous SNP |