Detailed information of SNP:
|
SNP ID:
sf0412091098(Gbrowse)
Chromosome: chr04 Position: 12091098 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1403 | 52.25% | 47.75% |
| All Indica | 783 | 18.90% | 81.10% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 365 | 14.25% | 85.75% |
| Indica II | 212 | 18.87% | 81.13% |
| Indica Intermediate | 206 | 27.18% | 72.82% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412091098 | T->G | LOC_Os04g21410(LOC_Os04g21410.1) | Non-Synonymous SNP |