Detailed information of SNP:



SNP ID: sf0412091098(Gbrowse)

Chromosome: chr04

Position: 12091098
Major allele: T

Minor allele: G

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of G(minor allele)
All1403 52.25% 47.75%
All Indica783 18.90% 81.10%
All Japonica497 99.80% 0.20%
Aus67 70.15% 29.85%
Indica I365 14.25% 85.75%
Indica II212 18.87% 81.13%
Indica Intermediate206 27.18% 72.82%
Temperate Japonica335 99.70% 0.30%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 92.86% 7.14%
Intermediate42 69.05% 30.95%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0412091098 T->G LOC_Os04g21410(LOC_Os04g21410.1) Non-Synonymous SNP