Detailed information of SNP:
|
SNP ID:
sf0412115215(Gbrowse)
Chromosome: chr04 Position: 12115215 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 58.16% | 41.84% |
| All Indica | 799 | 92.49% | 7.51% |
| All Japonica | 493 | 4.67% | 95.33% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 76.06% | 23.94% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 333 | 0.60% | 99.40% |
| Tropical Japonica | 92 | 16.30% | 83.70% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412115215 | G->A | INTERGENIC | None |