Detailed information of SNP:
|
SNP ID:
sf0412115377(Gbrowse)
Chromosome: chr04 Position: 12115377 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 62.19% | 37.81% |
| All Indica | 799 | 98.50% | 1.50% |
| All Japonica | 493 | 6.29% | 93.71% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 334 | 1.80% | 98.20% |
| Tropical Japonica | 91 | 19.78% | 80.22% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412115377 | C->T | INTERGENIC | None |