Detailed information of SNP:
|
SNP ID:
sf0412115508(Gbrowse)
Chromosome: chr04 Position: 12115508 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 66.38% | 33.62% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 489 | 7.36% | 92.64% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 331 | 2.42% | 97.58% |
| Tropical Japonica | 90 | 23.33% | 76.67% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412115508 | A->G | INTERGENIC | None |