Detailed information of SNP:
|
SNP ID:
sf0412115972(Gbrowse)
Chromosome: chr04 Position: 12115972 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 57.15% | 42.85% |
| All Indica | 799 | 92.62% | 7.38% |
| All Japonica | 497 | 2.82% | 97.18% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 75.12% | 24.88% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412115972 | C->T | INTERGENIC | None |