Detailed information of SNP:
|
SNP ID:
sf0412116362(Gbrowse)
Chromosome: chr04 Position: 12116362 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 54.97% | 45.03% |
| All Indica | 784 | 88.78% | 11.22% |
| All Japonica | 495 | 4.24% | 95.76% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 368 | 93.75% | 6.25% |
| Indica II | 210 | 73.33% | 26.67% |
| Indica Intermediate | 206 | 95.63% | 4.37% |
| Temperate Japonica | 334 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 67 | 7.46% | 92.54% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 37 | 45.95% | 54.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412116362 | A->T | INTERGENIC | None |