Detailed information of SNP:
|
SNP ID:
sf0412119614(Gbrowse)
Chromosome: chr04 Position: 12119614 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 57.22% | 42.78% |
| All Indica | 799 | 95.62% | 4.38% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412119614 | G->T | INTERGENIC | None |