Detailed information of SNP:
SNP ID:
sf0412121896(Gbrowse)
Chromosome: chr04 Position: 12121896 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1372 | 89.94% | 10.06% |
All Indica | 797 | 99.75% | 0.25% |
All Japonica | 456 | 73.25% | 26.75% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 374 | 100.00% | 0.00% |
Indica II | 212 | 99.06% | 0.94% |
Indica Intermediate | 211 | 100.00% | 0.00% |
Temperate Japonica | 316 | 88.92% | 11.08% |
Tropical Japonica | 76 | 22.37% | 77.63% |
Japonica Intermediate | 64 | 56.25% | 43.75% |
Group VI/Aromatic | 14 | 42.86% | 57.14% |
Intermediate | 38 | 84.21% | 15.79% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0412121896 | C->T | INTERGENIC | None |