Detailed information of SNP:
|
SNP ID:
sf0412127984(Gbrowse)
Chromosome: chr04 Position: 12127984 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 55.65% | 44.35% |
| All Indica | 797 | 92.72% | 7.28% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 211 | 74.41% | 25.59% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412127984 | G->A | INTERGENIC | None |