Detailed information of SNP:
|
SNP ID:
sf0412135439(Gbrowse)
Chromosome: chr04 Position: 12135439 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 57.37% | 42.63% |
| All Indica | 799 | 96.12% | 3.88% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 37.50% | 62.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412135439 | G->A | INTERGENIC | None |