Detailed information of SNP:
|
SNP ID:
sf0412157504(Gbrowse)
Chromosome: chr04 Position: 12157504 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1276 | 92.63% | 7.37% |
| All Indica | 672 | 86.61% | 13.39% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 58 | 94.83% | 5.17% |
| Indica I | 315 | 84.13% | 15.87% |
| Indica II | 184 | 90.22% | 9.78% |
| Indica Intermediate | 173 | 87.28% | 12.72% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 36 | 97.22% | 2.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412157504 | C->T | LOC_Os04g21510(LOC_Os04g21510.1) | INTRON |