Detailed information of SNP:
|
SNP ID:
sf0412157506(Gbrowse)
Chromosome: chr04 Position: 12157506 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1389 | 62.78% | 37.22% |
| All Indica | 790 | 93.67% | 6.33% |
| All Japonica | 483 | 7.04% | 92.96% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 370 | 93.78% | 6.22% |
| Indica II | 211 | 94.31% | 5.69% |
| Indica Intermediate | 209 | 92.82% | 7.18% |
| Temperate Japonica | 329 | 2.13% | 97.87% |
| Tropical Japonica | 88 | 22.73% | 77.27% |
| Japonica Intermediate | 66 | 10.61% | 89.39% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 36 | 61.11% | 38.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412157506 | A->G | LOC_Os04g21510(LOC_Os04g21510.1) | INTRON |