Detailed information of SNP:
|
SNP ID:
sf0412164592(Gbrowse)
Chromosome: chr04 Position: 12164592 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 57.79% | 42.21% |
| All Indica | 799 | 96.12% | 3.88% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412164592 | C->T | INTERGENIC | None |