Detailed information of SNP:
|
SNP ID:
sf0412166640(Gbrowse)
Chromosome: chr04 Position: 12166640 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 52.55% | 47.45% |
| All Indica | 795 | 87.42% | 12.58% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 66 | 40.91% | 59.09% |
| Indica I | 372 | 87.37% | 12.63% |
| Indica II | 212 | 88.68% | 11.32% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 40.00% | 60.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412166640 | G->A | LOC_Os04g21530(LOC_Os04g21530.1) | Synonymous |