Detailed information of SNP:
|
SNP ID:
sf0412250827(Gbrowse)
Chromosome: chr04 Position: 12250827 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 74.89% | 25.11% |
| All Indica | 798 | 61.15% | 38.85% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 375 | 80.00% | 20.00% |
| Indica II | 213 | 55.40% | 44.60% |
| Indica Intermediate | 210 | 33.33% | 66.67% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412250827 | G->C | LOC_Os04g21670(LOC_Os04g21670.1) | Non-Synonymous SNP |