Detailed information of SNP:
|
SNP ID:
sf0412264733(Gbrowse)
Chromosome: chr04 Position: 12264733 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 87.82% | 12.18% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 474 | 68.35% | 31.65% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 321 | 80.69% | 19.31% |
| Tropical Japonica | 89 | 24.72% | 75.28% |
| Japonica Intermediate | 64 | 67.19% | 32.81% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412264733 | C->T | LOC_Os04g21700(LOC_Os04g21700.1) | Non-Synonymous SNP |