Detailed information of SNP:
|
SNP ID:
sf0412323774(Gbrowse)
Chromosome: chr04 Position: 12323774 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1279 | 97.65% | 2.35% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 359 | 92.20% | 7.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 221 | 88.24% | 11.76% |
| Tropical Japonica | 81 | 100.00% | 0.00% |
| Japonica Intermediate | 57 | 96.49% | 3.51% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412323774 | T->C | INTERGENIC | None |