Detailed information of SNP:
|
SNP ID:
sf0412422460(Gbrowse)
Chromosome: chr04 Position: 12422460 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1405 | 50.39% | 49.61% |
| All Indica | 786 | 20.10% | 79.90% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 25.76% | 74.24% |
| Indica I | 368 | 20.11% | 79.89% |
| Indica II | 207 | 23.19% | 76.81% |
| Indica Intermediate | 211 | 17.06% | 82.94% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412422460 | A->G | LOC_Os04g21960(LOC_Os04g21960.1) | Synonymous |