Detailed information of SNP:
|
SNP ID:
sf0412426925(Gbrowse)
Chromosome: chr04 Position: 12426925 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1397 | 93.27% | 6.73% |
| All Indica | 782 | 93.48% | 6.52% |
| All Japonica | 492 | 92.07% | 7.93% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 364 | 96.15% | 3.85% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 205 | 91.22% | 8.78% |
| Temperate Japonica | 334 | 92.81% | 7.19% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 65 | 76.92% | 23.08% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412426925 | T->C | INTERGENIC | None |