Detailed information of SNP:
|
SNP ID:
sf0412446085(Gbrowse)
Chromosome: chr04 Position: 12446085 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1375 | 58.91% | 41.09% |
| All Indica | 765 | 32.81% | 67.19% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 63 | 50.79% | 49.21% |
| Indica I | 356 | 46.35% | 53.65% |
| Indica II | 205 | 22.93% | 77.07% |
| Indica Intermediate | 204 | 19.12% | 80.88% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 12 | 75.00% | 25.00% |
| Intermediate | 39 | 69.23% | 30.77% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412446085 | T->C | LOC_Os04g22000(LOC_Os04g22000.1) | Non-Synonymous SNP |