Detailed information of SNP:
|
SNP ID:
sf0412446620(Gbrowse)
Chromosome: chr04 Position: 12446620 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1384 | 90.75% | 9.25% |
| All Indica | 764 | 83.64% | 16.36% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 364 | 90.38% | 9.62% |
| Indica II | 202 | 74.26% | 25.74% |
| Indica Intermediate | 198 | 80.81% | 19.19% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412446620 | G->A | LOC_Os04g22000(LOC_Os04g22000.1) | Synonymous |