Detailed information of SNP:
|
SNP ID:
sf0412446655(Gbrowse)
Chromosome: chr04 Position: 12446655 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1388 | 53.31% | 46.69% |
| All Indica | 770 | 23.77% | 76.23% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 42.42% | 57.58% |
| Indica I | 356 | 35.67% | 64.33% |
| Indica II | 207 | 14.49% | 85.51% |
| Indica Intermediate | 207 | 12.56% | 87.44% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412446655 | A->G | LOC_Os04g22000(LOC_Os04g22000.1) | Non-Synonymous SNP |