Detailed information of SNP:
|
SNP ID:
sf0412448300(Gbrowse)
Chromosome: chr04 Position: 12448300 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 89.66% | 10.34% |
| All Indica | 783 | 81.99% | 18.01% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 91.06% | 8.94% |
| Indica II | 208 | 72.12% | 27.88% |
| Indica Intermediate | 206 | 75.73% | 24.27% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412448300 | G->A | LOC_Os04g22000(LOC_Os04g22000.1) | Non-Synonymous SNP |