Detailed information of SNP:
|
SNP ID:
sf0412448354(Gbrowse)
Chromosome: chr04 Position: 12448354 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1387 | 88.32% | 11.68% |
| All Indica | 767 | 79.27% | 20.73% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 361 | 87.26% | 12.74% |
| Indica II | 205 | 70.24% | 29.76% |
| Indica Intermediate | 201 | 74.13% | 25.87% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412448354 | A->C | LOC_Os04g22000(LOC_Os04g22000.1) | Non-Synonymous SNP |