Detailed information of SNP:
|
SNP ID:
sf0412456799(Gbrowse)
Chromosome: chr04 Position: 12456799 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1337 | 54.53% | 45.47% |
| All Indica | 728 | 25.27% | 74.73% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 58 | 18.97% | 81.03% |
| Indica I | 332 | 26.20% | 73.80% |
| Indica II | 200 | 25.50% | 74.50% |
| Indica Intermediate | 196 | 23.47% | 76.53% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412456799 | A->G | LOC_Os04g22010(LOC_Os04g22010.1) | Synonymous |