Detailed information of SNP:
|
SNP ID:
sf0412465790(Gbrowse)
Chromosome: chr04 Position: 12465790 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1382 | 94.50% | 5.50% |
| All Indica | 768 | 91.41% | 8.59% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 63 | 90.48% | 9.52% |
| Indica I | 362 | 96.96% | 3.04% |
| Indica II | 204 | 83.33% | 16.67% |
| Indica Intermediate | 202 | 89.60% | 10.40% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412465790 | G->A | LOC_Os04g22030(LOC_Os04g22030.1) | Synonymous |