Detailed information of SNP:
|
SNP ID:
sf0412467566(Gbrowse)
Chromosome: chr04 Position: 12467566 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1360 | 94.93% | 5.07% |
| All Indica | 752 | 94.15% | 5.85% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 56 | 66.07% | 33.93% |
| Indica I | 361 | 94.18% | 5.82% |
| Indica II | 199 | 94.47% | 5.53% |
| Indica Intermediate | 192 | 93.75% | 6.25% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412467566 | C->T | LOC_Os04g22030(LOC_Os04g22030.1) | INTRON |