Detailed information of SNP:
|
SNP ID:
sf0412468308(Gbrowse)
Chromosome: chr04 Position: 12468308 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1373 | 54.12% | 45.88% |
| All Indica | 759 | 85.77% | 14.23% |
| All Japonica | 496 | 2.42% | 97.58% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 351 | 83.76% | 16.24% |
| Indica II | 205 | 81.95% | 18.05% |
| Indica Intermediate | 203 | 93.10% | 6.90% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 93 | 5.38% | 94.62% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 39 | 35.90% | 64.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412468308 | A->G | LOC_Os04g22030(LOC_Os04g22030.1) | INTRON |