Detailed information of SNP:
|
SNP ID:
sf0412469331(Gbrowse)
Chromosome: chr04 Position: 12469331 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1376 | 89.10% | 10.90% |
| All Indica | 758 | 81.27% | 18.73% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 353 | 87.82% | 12.18% |
| Indica II | 204 | 70.10% | 29.90% |
| Indica Intermediate | 201 | 81.09% | 18.91% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412469331 | T->G | LOC_Os04g22030(LOC_Os04g22030.1) | Non-Synonymous SNP |