Detailed information of SNP:
|
SNP ID:
sf0412470158(Gbrowse)
Chromosome: chr04 Position: 12470158 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1369 | 84.15% | 15.85% |
| All Indica | 754 | 74.54% | 25.46% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 62 | 74.19% | 25.81% |
| Indica I | 353 | 69.97% | 30.03% |
| Indica II | 204 | 78.43% | 21.57% |
| Indica Intermediate | 197 | 78.68% | 21.32% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412470158 | G->A | LOC_Os04g22030(LOC_Os04g22030.1) | Synonymous |