Detailed information of SNP:
|
SNP ID:
sf0412470185(Gbrowse)
Chromosome: chr04 Position: 12470185 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1390 | 55.25% | 44.75% |
| All Indica | 773 | 88.23% | 11.77% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 66 | 80.30% | 19.70% |
| Indica I | 359 | 83.29% | 16.71% |
| Indica II | 207 | 88.41% | 11.59% |
| Indica Intermediate | 207 | 96.62% | 3.38% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412470185 | T->A | LOC_Os04g22030(LOC_Os04g22030.1) | Synonymous |