Detailed information of SNP:
|
SNP ID:
sf0412474788(Gbrowse)
Chromosome: chr04 Position: 12474788 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1276 | 56.97% | 43.03% |
| All Indica | 666 | 25.23% | 74.77% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 60 | 55.00% | 45.00% |
| Indica I | 300 | 35.33% | 64.67% |
| Indica II | 181 | 19.89% | 80.11% |
| Indica Intermediate | 185 | 14.05% | 85.95% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412474788 | A->G | INTERGENIC | None |