Detailed information of SNP:
|
SNP ID:
sf0412488519(Gbrowse)
Chromosome: chr04 Position: 12488519 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1307 | 88.60% | 11.40% |
| All Indica | 688 | 84.74% | 15.26% |
| All Japonica | 497 | 93.56% | 6.44% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 324 | 86.73% | 13.27% |
| Indica II | 187 | 82.35% | 17.65% |
| Indica Intermediate | 177 | 83.62% | 16.38% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412488519 | A->G | INTERGENIC | None |