Detailed information of SNP:
|
SNP ID:
sf0412503099(Gbrowse)
Chromosome: chr04 Position: 12503099 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 91.88% | 8.12% |
| All Indica | 799 | 88.49% | 11.51% |
| All Japonica | 496 | 98.39% | 1.61% |
| Aus | 66 | 80.30% | 19.70% |
| Indica I | 375 | 88.27% | 11.73% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412503099 | A->G | LOC_Os04g22090(LOC_Os04g22090.1) | Synonymous |