Detailed information of SNP:
|
SNP ID:
sf0412503470(Gbrowse)
Chromosome: chr04 Position: 12503470 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 93.14% | 6.86% |
| All Indica | 798 | 89.22% | 10.78% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 65 | 87.69% | 12.31% |
| Indica I | 375 | 89.07% | 10.93% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 210 | 85.24% | 14.76% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412503470 | C->G | LOC_Os04g22090(LOC_Os04g22090.1) | Non-Synonymous SNP |