Detailed information of SNP:
|
SNP ID:
sf0412531486(Gbrowse)
Chromosome: chr04 Position: 12531486 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 65.96% | 34.04% |
| All Indica | 799 | 44.43% | 55.57% |
| All Japonica | 497 | 93.16% | 6.84% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 20.27% | 79.73% |
| Indica II | 213 | 64.32% | 35.68% |
| Indica Intermediate | 211 | 67.30% | 32.70% |
| Temperate Japonica | 335 | 95.52% | 4.48% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412531486 | A->T | INTERGENIC | None |